{
  "_id": "6a608a6e14e95619b75daf09",
  "Type": "Package",
  "Package": "pedprobr",
  "Title": "Probability Computations on Pedigrees",
  "Version": "1.1.0",
  "Authors@R": "person(\"Magnus Dehli\", \"Vigeland\", , \"m.d.vigeland@medisin.uio.no\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9134-4962\"))",
  "Description": "An implementation of the Elston-Stewart algorithm for\ncalculating pedigree likelihoods given genetic marker data\n(Elston and Stewart (1971) <doi:10.1159/000152448>). The\nstandard algorithm is extended to allow inbred founders.\n'pedprobr' is part of the 'pedsuite', a collection of packages\nfor pedigree analysis in R. In particular, 'pedprobr' depends\non 'pedtools' for pedigree manipulations and 'pedmut' for\nmutation modelling. For more information, see 'Pedigree\nAnalysis in R' (Vigeland, 2021, ISBN:9780128244302).",
  "License": "GPL (>= 2)",
  "URL": "https://github.com/magnusdv/pedprobr",
  "BugReports": "https://github.com/magnusdv/pedprobr/issues",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "Roxygen": "list(markdown = TRUE)",
  "SystemRequirements": "MERLIN (https://csg.sph.umich.edu/abecasis/merlin/)\nfor calculations involving multiple linked markers.",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://magnusdv.r-universe.dev",
  "Date/Publication": "2026-06-22 13:17:57 UTC",
  "RemoteUrl": "https://github.com/magnusdv/pedprobr",
  "RemoteRef": "HEAD",
  "RemoteSha": "3de93683547bba5493755a427c0273447381c86d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-22 09:13:20 UTC",
    "User": "root"
  },
  "Author": "Magnus Dehli Vigeland [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9134-4962>)",
  "Maintainer": "Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>",
  "_user": "magnusdv",
  "_type": "src",
  "_file": "pedprobr_1.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/6adb5e8ea78e26e96be247787cca067a272f85c612ff015b97ea3e6850f744dd",
  "_filesize": 229666,
  "_sha256": "6adb5e8ea78e26e96be247787cca067a272f85c612ff015b97ea3e6850f744dd",
  "_expires": "2026-10-30T09:16:28.000Z",
  "_created": "2026-07-22T09:13:20.000Z",
  "_published": "2026-07-22T09:16:30.496Z",
  "_jobs": [
    {
      "job": 88881114608,
      "time": 136,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8524345015"
    },
    {
      "job": 88881114625,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8524347723"
    },
    {
      "job": 88881114591,
      "time": 87,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8524323281"
    },
    {
      "job": 88881114593,
      "time": 98,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8524328940"
    },
    {
      "job": 88880319445,
      "time": 221,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8524283819"
    },
    {
      "job": 88881114534,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8524335423"
    },
    {
      "job": 88881114617,
      "time": 85,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8524322343"
    },
    {
      "job": 88881114624,
      "time": 97,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8524328336"
    },
    {
      "job": 88881114580,
      "time": 104,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8524332061"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763",
  "_status": "success",
  "_upstream": "https://github.com/magnusdv/pedprobr",
  "_commit": {
    "id": "3de93683547bba5493755a427c0273447381c86d",
    "author": "Magnus Dehli Vigeland <magnusdv@medisin.uio.no>",
    "committer": "Magnus Dehli Vigeland <magnusdv@medisin.uio.no>",
    "message": "Update NEWS\n",
    "time": 1782134277
  },
  "_maintainer": {
    "name": "Magnus Dehli Vigeland",
    "email": "m.d.vigeland@medisin.uio.no",
    "orcid": "0000-0002-9134-4962"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "pedtools",
      "version": ">= 2.11.0",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "pedmut",
      "version": ">= 0.9.0",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "magnusdv",
  "_selfowned": true,
  "_usedby": 11,
  "_updates": [
    {
      "week": "2026-08",
      "n": 2
    },
    {
      "week": "2026-23",
      "n": 1
    },
    {
      "week": "2026-24",
      "n": 7
    },
    {
      "week": "2026-26",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "v1.1.0",
      "date": "2026-06-22"
    }
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "magnusdv",
      "count": 280,
      "uuid": 5310284
    }
  ],
  "_userbio": {
    "uuid": 5310284,
    "type": "user",
    "name": "Magnus Dehli Vigeland",
    "followers": 48,
    "description": "Statistical geneticist"
  },
  "_downloads": {
    "count": 662,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pedprobr"
  },
  "_mentions": 3,
  "_devurl": "https://github.com/magnusdv/pedprobr",
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/pedprobr.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/magnusdv/pedprobr",
  "_realowner": "magnusdv",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2019-11-01"
    },
    {
      "version": "0.2.0",
      "date": "2020-03-21"
    },
    {
      "version": "0.3",
      "date": "2020-07-05"
    },
    {
      "version": "0.4.0",
      "date": "2020-11-13"
    },
    {
      "version": "0.5.0",
      "date": "2021-03-27"
    },
    {
      "version": "0.6.0",
      "date": "2022-01-03"
    },
    {
      "version": "0.6.1",
      "date": "2022-01-05"
    },
    {
      "version": "0.7.0",
      "date": "2022-06-07"
    },
    {
      "version": "0.7.1",
      "date": "2023-02-13"
    },
    {
      "version": "0.8.0",
      "date": "2023-04-13"
    },
    {
      "version": "0.9.2",
      "date": "2024-02-28"
    },
    {
      "version": "0.9.3",
      "date": "2024-04-02"
    },
    {
      "version": "0.9.4",
      "date": "2024-05-08"
    },
    {
      "version": "0.9.5",
      "date": "2025-03-22"
    },
    {
      "version": "1.0.0",
      "date": "2025-05-05"
    },
    {
      "version": "1.0.1",
      "date": "2025-05-07"
    },
    {
      "version": "1.1.0",
      "date": "2026-06-22"
    }
  ],
  "_exports": [
    "allGenotypes",
    "checkMerlin",
    "genoCombinations",
    "haldane",
    "HWprob",
    "kosambi",
    "likelihood",
    "likelihood2",
    "likelihoodMerlin",
    "lumpAlleles",
    "merlin",
    "oneMarkerDistribution",
    "setMutationModel",
    "twoMarkerDistribution"
  ],
  "_help": [
    {
      "page": "allGenotypes",
      "title": "Genotype matrix",
      "topics": [
        "allGenotypes"
      ]
    },
    {
      "page": "genoCombinations",
      "title": "Genotype combinations",
      "topics": [
        "genoCombinations"
      ]
    },
    {
      "page": "haldane",
      "title": "Genetic map functions",
      "topics": [
        "haldane",
        "kosambi"
      ]
    },
    {
      "page": "HWprob",
      "title": "Hardy-Weinberg probabilities",
      "topics": [
        "HWprob"
      ]
    },
    {
      "page": "likelihood",
      "title": "Pedigree likelihood",
      "topics": [
        "likelihood",
        "likelihood.list",
        "likelihood.ped",
        "likelihood2",
        "likelihood2.list",
        "likelihood2.ped"
      ]
    },
    {
      "page": "lumpAlleles",
      "title": "Allele lumping",
      "topics": [
        "lumpAlleles"
      ]
    },
    {
      "page": "merlin",
      "title": "Pedigree likelihoods computed by MERLIN",
      "topics": [
        "checkMerlin",
        "likelihoodMerlin",
        "merlin"
      ]
    },
    {
      "page": "oneMarkerDistribution",
      "title": "Genotype distribution for a single marker",
      "topics": [
        "oneMarkerDistribution"
      ]
    },
    {
      "page": "setMutationModel",
      "title": "Set a mutation model",
      "topics": [
        "setMutationModel"
      ]
    },
    {
      "page": "twoMarkerDistribution",
      "title": "Genotype distribution for two linked markers",
      "topics": [
        "twoMarkerDistribution"
      ]
    }
  ],
  "_pkglogo": "https://github.com/magnusdv/pedprobr/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/magnusdv/pedprobr/raw/HEAD/README.md",
  "_rundeps": [
    "evaluate",
    "highr",
    "kinship2",
    "knitr",
    "lattice",
    "lpSolve",
    "Matrix",
    "pedmut",
    "pedtools",
    "quadprog",
    "xfun",
    "yaml"
  ],
  "_score": 5.898725181589494,
  "_indexed": true,
  "_nocasepkg": "pedprobr",
  "_universes": [
    "magnusdv"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-22T09:15:25.000Z",
      "distro": "resolute",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/37848d83a6fae215071de7003917af98239589d5f3c146b70069988a34185957",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-22T09:15:30.000Z",
      "distro": "resolute",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/7ba61a5eb54c1ac37263785222a82d765776802c074898f744dcee41e674dbdf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-22T09:14:49.000Z",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/0745d9149ede9219abd9b6b21d953d6fbd9044413d752e337a3f77978af2b03b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-07-22T09:14:58.000Z",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/01d7af57352b1ec6ebbac2a5b76397721800133d964cea6e5058106cc48c5156",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.0",
      "date": "2026-07-22T09:15:34.000Z",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/c6a3462652e98523d1e90b7137221d4b35fa4584284773998e2442a642264576",
      "status": "success",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-22T09:14:30.000Z",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/78327d92c8bec2896f3a12197569390707d833eba3ecc2fc52ee3a578dec9ff1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-22T09:14:48.000Z",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/f909934cf03ac28e46246998a833a0f991b72613656ab000d56aebb0e338f622",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-22T09:14:51.000Z",
      "commit": "3de93683547bba5493755a427c0273447381c86d",
      "fileid": "https://r2.ropensci.org/ae8b058346cb7f3e6f8d9c6993f8d4d101e3aab0d3f8aecba5f33659e12886f0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/29906856763"
    }
  ]
}