{ "_id": "6a43c51a58db26aa3c359885", "Package": "pedsuite", "Title": "Easy Installation of the 'pedsuite' Packages for Pedigree\nAnalysis", "Version": "1.4.0", "Authors@R": "c(\nperson(\"Magnus Dehli\", \"Vigeland\", , \"m.d.vigeland@medisin.uio.no\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9134-4962\")),\nperson(\"Thore\", \"Egeland\", , \"thore.egeland@nmbu.no\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3465-8885\"))\n)", "Description": "The 'pedsuite' is a collection of packages for pedigree\nanalysis, covering applications in forensic genetics, medical\ngenetics and more. A detailed presentation of the 'pedsuite' is\ngiven in the book 'Pedigree Analysis in R' (Vigeland, 2021,\nISBN: 9780128244302).", "License": "GPL (>= 3)", "URL": "https://magnusdv.github.io/pedsuite/,\nhttps://github.com/magnusdv/pedsuite", "BugReports": "https://github.com/magnusdv/pedsuite/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-GB", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake", "Repository": "https://magnusdv.r-universe.dev", "Date/Publication": "2026-05-26 17:06:36 UTC", "RemoteUrl": "https://github.com/magnusdv/pedsuite", "RemoteRef": "HEAD", "RemoteSha": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-30 13:22:03 UTC", "User": "root" }, "Author": "Magnus Dehli Vigeland [aut, cre] (ORCID:\n),\nThore Egeland [aut] (ORCID: )", "Maintainer": "Magnus Dehli Vigeland ", "MD5sum": "460c9150f2f153a0636d247d9953e89c", "_user": "magnusdv", "_type": "src", "_file": "pedsuite_1.4.0.tar.gz", "_fileid": "6f7d509d40ec7624de8f5dd8db88530a53ca8a2fc56d467ad76a6dd55eaf101b", "_filesize": 1427494, "_sha256": "6f7d509d40ec7624de8f5dd8db88530a53ca8a2fc56d467ad76a6dd55eaf101b", "_created": "2026-06-30T13:22:03.000Z", "_published": "2026-06-30T13:31:06.858Z", "_distro": "resolute", "_jobs": [ { "job": 84300958172, "time": 153, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7981904676" }, { "job": 84300958150, "time": 154, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "7981904852" }, { "job": 84300958168, "time": 122, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7982063384" }, { "job": 84300958148, "time": 137, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "7982005730" }, { "job": 84300267043, "time": 183, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "7981833354" }, { "job": 84300958209, "time": 147, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7981901148" }, { "job": 84300958177, "time": 111, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7981885160" }, { "job": 84300958167, "time": 104, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7981882510" }, { "job": 84300958182, "time": 108, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "7981883940" } ], "_buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/magnusdv/pedsuite", "_commit": { "id": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "author": "Magnus Dehli Vigeland ", "committer": "Magnus Dehli Vigeland ", "message": "Add GHEP workshop home page\n", "time": 1779815196 }, "_maintainer": { "name": "Magnus Dehli Vigeland", "email": "m.d.vigeland@medisin.uio.no", "orcid": "0000-0002-9134-4962" }, "_registered": true, "_dependencies": [ { "package": "forrel", "role": "Depends" }, { "package": "pedprobr", "role": "Depends" }, { "package": "pedtools", "role": "Depends" }, { "package": "ribd", "role": "Depends" }, { "package": "verbalisr", "role": "Depends" }, { "package": "dvir", "role": "Imports" }, { "package": "ibdfindr", "role": "Imports" }, { "package": "ibdsim2", "role": "Imports" }, { "package": "norSTR", "role": "Imports" }, { "package": "paramlink2", "role": "Imports" }, { "package": "pedFamilias", "role": "Imports" }, { "package": "pedbuildr", "role": "Imports" }, { "package": "pedmut", "role": "Imports" }, { "package": "segregatr", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "magnusdv", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-45", "n": 2 }, { "week": "2025-47", "n": 4 }, { "week": "2026-19", "n": 2 }, { "week": "2026-22", "n": 1 } ], "_tags": [ { "name": "v1.4.0", "date": "2025-11-23" } ], "_stars": 16, "_contributors": [ { "user": "magnusdv", "count": 208, "uuid": 5310284 } ], "_userbio": { "uuid": 5310284, "type": "user", "name": "Magnus Dehli Vigeland", "followers": 48, "description": "Statistical geneticist" }, "_downloads": { "count": 295, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pedsuite" }, "_devurl": "https://github.com/magnusdv/pedsuite", "_pkgdown": "https://magnusdv.github.io/pedsuite/", "_searchresults": 46, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/pedsuite.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/magnusdv/pedsuite", "_realowner": "magnusdv", "_cranurl": true, "_releases": [ { "version": "1.0.4", "date": "2021-06-21" }, { "version": "1.1.0", "date": "2022-01-07" }, { "version": "1.2.0", "date": "2023-06-27" }, { "version": "1.3.1", "date": "2024-09-06" }, { "version": "1.4.0", "date": "2025-11-23" } ], "_exports": [], "_help": [], "_readme": "https://github.com/magnusdv/pedsuite/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "dvir", "evaluate", "farver", "forrel", "ggplot2", "glue", "gtable", "highr", "ibdfindr", "ibdsim2", "isoband", "kinship2", "knitr", "labeling", "lattice", "lifecycle", "lpSolve", "Matrix", "mirai", "nanonext", "norSTR", "paramlink2", "pedbuildr", "pedFamilias", "pedmut", "pedprobr", "pedtools", "quadprog", "R6", "RColorBrewer", "Rcpp", "ribd", "rlang", "S7", "scales", "segregatr", "slam", "vctrs", "verbalisr", "viridisLite", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "pedsuite.Rmd", "filename": "pedsuite.html", "title": "Getting started with the pedsuite", "engine": "knitr::rmarkdown", "headings": [ "Installation", "A quick tour", "1. Create a pedigree (pedtools)", "2. Calculate the inbreeding coefficient (ribd)", "3. Realised inbreeding (ibdsim2)", "4. Marker simulation (forrel)", "5. Inference of pairwise relationships (forrel)", "Where to go from here" ], "created": "2021-06-14 20:13:05", "modified": "2024-09-05 14:35:06", "commits": 12 } ], "_score": 6.167907810001481, "_indexed": true, "_nocasepkg": "pedsuite", "_universes": [ "magnusdv" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.4.0", "date": "2026-06-30T13:24:19.000Z", "distro": "resolute", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "faabebac29eb1d14c1134b48046bef0b91a6b263dab731ebd87084c43dbeb7f6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" }, { "r": "4.6.1", "os": "linux", "version": "1.4.0", "date": "2026-06-30T13:24:20.000Z", "distro": "resolute", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "c181717bc04834a5d30663634b2c886bcbdd645f6783bf3133920cb396bd0c65", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" }, { "r": "4.5.3", "os": "mac", "version": "1.4.0", "date": "2026-06-30T13:30:15.000Z", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "9bc069abadce63646fc4b356d8010531f14bf0dbcb89541315434f7487964dc6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" }, { "r": "4.6.1", "os": "mac", "version": "1.4.0", "date": "2026-06-30T13:28:10.000Z", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "6533026813b2a012238e40b9f7d43ec30b2fc85e9774bcd34eb5aa13e1f89e94", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" }, { "r": "4.6.0", "os": "wasm", "version": "1.4.0", "date": "2026-06-30T13:24:47.000Z", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "e781166cc1e17b353a38e906d0bcd04ba69864ecc560b7dc38929ab64a236027", "status": "success", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" }, { "r": "4.7.0", "os": "win", "version": "1.4.0", "date": "2026-06-30T13:23:30.000Z", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "ed5b83a9b32b4b8ca7af26e9a4e9d91245fa686b2959f66e7513c5f509eab685", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" }, { "r": "4.5.3", "os": "win", "version": "1.4.0", "date": "2026-06-30T13:23:24.000Z", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "5933ea4fb3836c61505e083d14fdd6fefaa212ce7e56c16b4eccddc10b12e946", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" }, { "r": "4.6.1", "os": "win", "version": "1.4.0", "date": "2026-06-30T13:23:27.000Z", "commit": "9b7fe0ba4ccac7c83a6d67af5373a0b36c5de679", "fileid": "e41238ddf9405a3af81b288b77a7697ac0f186648e2b98b5a78b228df6b89f04", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/28447373068" } ] }