{
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  "Package": "ribd",
  "Title": "Pedigree-based Relatedness Coefficients",
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  "Authors@R": "person(\"Magnus Dehli\", \"Vigeland\", , \"m.d.vigeland@medisin.uio.no\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9134-4962\"))",
  "Description": "Recursive algorithms for computing various relatedness\ncoefficients, including pairwise kinship, kappa and identity\ncoefficients. Both autosomal and X-linked coefficients are\ncomputed. Founders are allowed to be inbred, which enables\nconstruction of any given kappa coefficients, as described in\nVigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition\nto the standard coefficients, 'ribd' also computes a range of\nlesser-known coefficients, including generalised kinship\ncoefficients, multi-person coefficients and two-locus\ncoefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>).\nMany features of 'ribd' are available through the online app\n'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see\nVigeland (2022) <doi:10.1186/s12859-022-04759-y>.",
  "License": "GPL-3",
  "URL": "https://github.com/magnusdv/ribd,\nhttps://magnusdv.github.io/pedsuite/",
  "Encoding": "UTF-8",
  "Language": "en-GB",
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  "Repository": "https://magnusdv.r-universe.dev",
  "Date/Publication": "2026-06-12 08:28:22 UTC",
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  "Author": "Magnus Dehli Vigeland [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9134-4962>)",
  "Maintainer": "Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>",
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    "author": "Magnus Dehli Vigeland <magnusdv@medisin.uio.no>",
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    "kinship",
    "pedigree-analysis",
    "pedsuite",
    "relatedness"
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      "date": "2019-11-01"
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      "date": "2020-02-03"
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    "detailed2condensed",
    "ELR",
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    "gKinship",
    "ibdDraw",
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    "identityCoefs",
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    "kin2deg",
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    "kinship2_inbreeding",
    "kinship2_kinship",
    "minimalPattern",
    "multiPersonIBD",
    "realisedIbdVariance",
    "showInTriangle",
    "twoLocusIBD",
    "twoLocusIdentity",
    "twoLocusInbreeding",
    "twoLocusKinship",
    "twoLocusPlot"
  ],
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      "name": "basicRelationships",
      "title": "Basic relationships",
      "object": "basicRelationships",
      "class": [
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      ],
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        "label",
        "relationship",
        "phi",
        "kappa0",
        "kappa1",
        "kappa2",
        "pos"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
    },
    {
      "name": "jicaque",
      "title": "Jicaque pedigree",
      "object": "jicaque",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "fid",
        "mid",
        "sex"
      ],
      "rows": 22,
      "table": true,
      "tojson": true
    }
  ],
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    {
      "page": "basicRelationships",
      "title": "Basic relationships",
      "topics": [
        "basicRelationships"
      ]
    },
    {
      "page": "coeffTable",
      "title": "Table of pairwise relatedness coefficients",
      "topics": [
        "coeffTable"
      ]
    },
    {
      "page": "condensedIdentity",
      "title": "Condensed identity coefficients",
      "topics": [
        "condensedIdentity"
      ]
    },
    {
      "page": "condensedIdentityX",
      "title": "Identity coefficients on X",
      "topics": [
        "condensedIdentityX"
      ]
    },
    {
      "page": "constructPedigree",
      "title": "Pedigree construction",
      "topics": [
        "constructPedigree"
      ]
    },
    {
      "page": "ELR",
      "title": "Expected LR of a pairwise kinship test",
      "topics": [
        "ELR"
      ]
    },
    {
      "page": "external_coefs",
      "title": "Relatedness coefficients by other programs",
      "topics": [
        "external_coefs",
        "kinship2_inbreeding",
        "kinship2_kinship"
      ]
    },
    {
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      "title": "Generalised kinship coefficients",
      "topics": [
        "gip",
        "gKinship"
      ]
    },
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      "page": "ibdDraw",
      "title": "Colourised IBD plot",
      "topics": [
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      ]
    },
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      "title": "IBD triangle plot",
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      ]
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        "identityCoefs"
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      "title": "Inbreeding coefficients",
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      ]
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      "title": "IBD (kappa) coefficients",
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      ]
    },
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      "title": "Degree of relationship",
      "topics": [
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      ]
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      "title": "Kinship coefficients",
      "topics": [
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      "title": "Two-locus coefficient plot",
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