{
  "_id": "6a21242dcd65a98ecbd201cd",
  "Type": "Package",
  "Package": "ribd",
  "Title": "Pedigree-based Relatedness Coefficients",
  "Version": "1.7.1.9000",
  "Authors@R": "person(\"Magnus Dehli\", \"Vigeland\", , \"m.d.vigeland@medisin.uio.no\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9134-4962\"))",
  "Description": "Recursive algorithms for computing various relatedness\ncoefficients, including pairwise kinship, kappa and identity\ncoefficients. Both autosomal and X-linked coefficients are\ncomputed. Founders are allowed to be inbred, which enables\nconstruction of any given kappa coefficients, as described in\nVigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition\nto the standard coefficients, 'ribd' also computes a range of\nlesser-known coefficients, including generalised kinship\ncoefficients, multi-person coefficients and two-locus\ncoefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>).\nMany features of 'ribd' are available through the online app\n'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see\nVigeland (2022) <doi:10.1186/s12859-022-04759-y>.",
  "License": "GPL-3",
  "URL": "https://github.com/magnusdv/ribd,\nhttps://magnusdv.github.io/pedsuite/",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Repository": "https://magnusdv.r-universe.dev",
  "Date/Publication": "2025-04-08 10:49:47 UTC",
  "RemoteUrl": "https://github.com/magnusdv/ribd",
  "RemoteRef": "HEAD",
  "RemoteSha": "137df46a00fb79a781350adc1d675bc535700333",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 07:04:04 UTC",
    "User": "root"
  },
  "Author": "Magnus Dehli Vigeland [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9134-4962>)",
  "Maintainer": "Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>",
  "MD5sum": "4a4f0de2825c65902a773d2af56ded3d",
  "_user": "magnusdv",
  "_type": "src",
  "_file": "ribd_1.7.1.9000.tar.gz",
  "_fileid": "0101d57c01b06f8e7e244a0989c9d870422db65d278a4630423bfd9a199f3df3",
  "_filesize": 628098,
  "_sha256": "0101d57c01b06f8e7e244a0989c9d870422db65d278a4630423bfd9a199f3df3",
  "_created": "2026-06-04T07:04:04.000Z",
  "_published": "2026-06-04T07:07:25.511Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79467187563,
      "time": 161,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7405138687"
    },
    {
      "job": 79467187530,
      "time": 152,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405136064"
    },
    {
      "job": 79467187611,
      "time": 106,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7405135756"
    },
    {
      "job": 79467187551,
      "time": 95,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405129640"
    },
    {
      "job": 79466723946,
      "time": 200,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405092719"
    },
    {
      "job": 79467187590,
      "time": 131,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405130104"
    },
    {
      "job": 79467187555,
      "time": 130,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7405130122"
    },
    {
      "job": 79467187562,
      "time": 114,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7405125745"
    },
    {
      "job": 79467187570,
      "time": 143,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405135008"
    }
  ],
  "_buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/magnusdv/ribd",
  "_commit": {
    "id": "137df46a00fb79a781350adc1d675bc535700333",
    "author": "Magnus Dehli Vigeland <magnusdv@medisin.uio.no>",
    "committer": "Magnus Dehli Vigeland <magnusdv@medisin.uio.no>",
    "message": "Minor tweaks\n",
    "time": 1744109387
  },
  "_maintainer": {
    "name": "Magnus Dehli Vigeland",
    "email": "m.d.vigeland@medisin.uio.no",
    "orcid": "0000-0002-9134-4962"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "pedtools",
      "version": ">= 2.6.0",
      "role": "Depends"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "kinship2",
      "role": "Imports"
    },
    {
      "package": "slam",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "ggrepel",
      "role": "Suggests"
    },
    {
      "package": "plotly",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "magnusdv",
  "_selfowned": true,
  "_usedby": 11,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "inbreeding-coefficient",
    "kinship",
    "pedigree-analysis",
    "pedsuite",
    "relatedness"
  ],
  "_stars": 7,
  "_contributors": [
    {
      "user": "magnusdv",
      "count": 354,
      "uuid": 5310284
    }
  ],
  "_userbio": {
    "uuid": 5310284,
    "type": "user",
    "name": "Magnus Dehli Vigeland",
    "description": "Statistical geneticist"
  },
  "_downloads": {
    "count": 712,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ribd"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/magnusdv/ribd",
  "_pkgdown": "https://magnusdv.github.io/pedsuite/",
  "_searchresults": 11,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/ribd.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/magnusdv/ribd",
  "_realowner": "magnusdv",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2019-11-01"
    },
    {
      "version": "1.0.1",
      "date": "2020-02-03"
    },
    {
      "version": "1.1.0",
      "date": "2020-06-19"
    },
    {
      "version": "1.2.0",
      "date": "2020-08-02"
    },
    {
      "version": "1.3.0",
      "date": "2021-05-28"
    },
    {
      "version": "1.3.1",
      "date": "2021-11-26"
    },
    {
      "version": "1.4.0",
      "date": "2022-04-17"
    },
    {
      "version": "1.5.0",
      "date": "2022-09-14"
    },
    {
      "version": "1.6.1",
      "date": "2023-08-10"
    },
    {
      "version": "1.7.0",
      "date": "2024-03-26"
    },
    {
      "version": "1.7.1",
      "date": "2025-02-08"
    }
  ],
  "_exports": [
    "coeffTable",
    "condensedIdentity",
    "condensedIdentityX",
    "constructPedigree",
    "detailed2condensed",
    "ELR",
    "gip",
    "gKinship",
    "ibdDraw",
    "ibdTriangle",
    "identityCoefs",
    "inbreeding",
    "kappaIBD",
    "kin2deg",
    "kinship",
    "kinship2_inbreeding",
    "kinship2_kinship",
    "minimalPattern",
    "multiPersonIBD",
    "realisedIbdVariance",
    "showInTriangle",
    "twoLocusIBD",
    "twoLocusIdentity",
    "twoLocusInbreeding",
    "twoLocusKinship",
    "twoLocusPlot"
  ],
  "_datasets": [
    {
      "name": "basicRelationships",
      "title": "Basic relationships",
      "object": "basicRelationships",
      "class": [
        "data.frame"
      ],
      "fields": [
        "label",
        "relationship",
        "phi",
        "kappa0",
        "kappa1",
        "kappa2",
        "pos"
      ],
      "rows": 12,
      "table": true,
      "tojson": true
    },
    {
      "name": "jicaque",
      "title": "Jicaque pedigree",
      "object": "jicaque",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "fid",
        "mid",
        "sex"
      ],
      "rows": 22,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "basicRelationships",
      "title": "Basic relationships",
      "topics": [
        "basicRelationships"
      ]
    },
    {
      "page": "coeffTable",
      "title": "Table of pairwise relatedness coefficients",
      "topics": [
        "coeffTable"
      ]
    },
    {
      "page": "condensedIdentity",
      "title": "Condensed identity coefficients",
      "topics": [
        "condensedIdentity"
      ]
    },
    {
      "page": "condensedIdentityX",
      "title": "Identity coefficients on X",
      "topics": [
        "condensedIdentityX"
      ]
    },
    {
      "page": "constructPedigree",
      "title": "Pedigree construction",
      "topics": [
        "constructPedigree"
      ]
    },
    {
      "page": "ELR",
      "title": "Expected LR of a pairwise kinship test",
      "topics": [
        "ELR"
      ]
    },
    {
      "page": "external_coefs",
      "title": "Relatedness coefficients by other programs",
      "topics": [
        "external_coefs",
        "kinship2_inbreeding",
        "kinship2_kinship"
      ]
    },
    {
      "page": "gKinship",
      "title": "Generalised kinship coefficients",
      "topics": [
        "gip",
        "gKinship"
      ]
    },
    {
      "page": "ibdDraw",
      "title": "Colourised IBD plot",
      "topics": [
        "ibdDraw"
      ]
    },
    {
      "page": "ibdTriangle",
      "title": "IBD triangle plot",
      "topics": [
        "ibdTriangle"
      ]
    },
    {
      "page": "identityCoefs",
      "title": "Omnibus function for identity coefficients",
      "topics": [
        "detailed2condensed",
        "identityCoefs"
      ]
    },
    {
      "page": "inbreeding",
      "title": "Inbreeding coefficients",
      "topics": [
        "inbreeding"
      ]
    },
    {
      "page": "jicaque",
      "title": "Jicaque pedigree",
      "topics": [
        "jicaque"
      ]
    },
    {
      "page": "kappaIbd",
      "title": "IBD (kappa) coefficients",
      "topics": [
        "kappaIBD"
      ]
    },
    {
      "page": "kin2deg",
      "title": "Degree of relationship",
      "topics": [
        "kin2deg"
      ]
    },
    {
      "page": "kinship",
      "title": "Kinship coefficients",
      "topics": [
        "kinship"
      ]
    },
    {
      "page": "minimalPattern",
      "title": "Minimal IBD pattern",
      "topics": [
        "minimalPattern"
      ]
    },
    {
      "page": "multiPersonIBD",
      "title": "Multi-person IBD coefficients",
      "topics": [
        "multiPersonIBD"
      ]
    },
    {
      "page": "realisedIbdVariance",
      "title": "Variance of realised relatedness coefficients",
      "topics": [
        "realisedIbdVariance"
      ]
    },
    {
      "page": "showInTriangle",
      "title": "Add points to the IBD triangle",
      "topics": [
        "showInTriangle"
      ]
    },
    {
      "page": "twoLocusIBD",
      "title": "Two-locus IBD coefficients",
      "topics": [
        "twoLocusIBD"
      ]
    },
    {
      "page": "twoLocusIdentity",
      "title": "Two-locus identity coefficients",
      "topics": [
        "twoLocusIdentity"
      ]
    },
    {
      "page": "twoLocusInbreeding",
      "title": "Two-locus inbreeding",
      "topics": [
        "twoLocusInbreeding"
      ]
    },
    {
      "page": "twoLocusKinship",
      "title": "Two-locus kinship coefficients",
      "topics": [
        "twoLocusKinship"
      ]
    },
    {
      "page": "twoLocusPlot",
      "title": "Two-locus coefficient plot",
      "topics": [
        "twoLocusPlot"
      ]
    }
  ],
  "_pkglogo": "https://github.com/magnusdv/ribd/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/magnusdv/ribd/raw/HEAD/README.md",
  "_rundeps": [
    "evaluate",
    "glue",
    "highr",
    "kinship2",
    "knitr",
    "lattice",
    "lpSolve",
    "Matrix",
    "pedmut",
    "pedtools",
    "quadprog",
    "slam",
    "xfun",
    "yaml"
  ],
  "_score": 5.103974669386388,
  "_indexed": true,
  "_nocasepkg": "ribd",
  "_universes": [
    "magnusdv"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:06:28.000Z",
      "distro": "noble",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "d1fa1e38269f4999d74e5a869a135cafd610a53adcbb6277a8e08c66656d1e4d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:06:22.000Z",
      "distro": "noble",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "15a231dcae6712fb52cc635f3c9ed405a049ed72fe863bad924239eeebdc7818",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:06:33.000Z",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "e6786011f7e619e72c5cc1a7be9311d46c819bab98799a0ea5d9946d7e47a91c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:06:11.000Z",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "cadd915c7f677022b9f7b5665eac6d9c1f99fa04983a8f54ee2a5af64295752d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:06:39.000Z",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "78090f611a4d309159f1dc484dc7add5e945e9193f047122cf0a42df68d8b9ae",
      "status": "success",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:05:49.000Z",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "ba2057ffad1d520021dcdb62564a8fdaabf44acfffda58e8ac83177d4d28cd36",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:05:31.000Z",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "f5dc1c5610fdc801fab254697b07a416e665c825a03584d96fb0c515e2afe6ed",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.7.1.9000",
      "date": "2026-06-04T07:06:07.000Z",
      "commit": "137df46a00fb79a781350adc1d675bc535700333",
      "fileid": "9ae8f7448db2cc4f128a2f7dd717ca29be7902c4330d7dee82af3cdd7f82439d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/26936245135"
    }
  ]
}