{
  "_id": "6a27b62624555f66ed538daa",
  "Package": "segregatr",
  "Title": "Segregation Analysis for Variant Interpretation",
  "Version": "0.5.0",
  "Authors@R": "c(\nperson(\"Magnus Dehli\", \"Vigeland\", , \"m.d.vigeland@medisin.uio.no\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9134-4962\")),\nperson(\"Christian\", \"Carrizosa\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3919-0011\"))\n)",
  "Description": "An implementation of the full-likelihood Bayes factor\n(FLB) for evaluating segregation evidence in clinical medical\ngenetics. The method was introduced by Thompson et al. (2003)\n<doi:10.1086/378100>. This implementation supports custom\npenetrance values and liability classes, and allows\nvisualisations and robustness analysis as presented in Ratajska\net al. (2023) <doi:10.1002/mgg3.2107>. See also the online app\n'shinyseg', <https://chrcarrizosa.shinyapps.io/shinyseg>, which\noffers interactive segregation analysis with many additional\nfeatures (Carrizosa et al. (2024)\n<doi:10.1093/bioinformatics/btae201>).",
  "License": "GPL-3",
  "URL": "https://github.com/magnusdv/segregatr",
  "BugReports": "https://github.com/magnusdv/segregatr/issues",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Repository": "https://magnusdv.r-universe.dev",
  "Date/Publication": "2025-08-25 17:08:42 UTC",
  "RemoteUrl": "https://github.com/magnusdv/segregatr",
  "RemoteRef": "HEAD",
  "RemoteSha": "1674c50a3f646909966044c6647c32da6ac4c9e7",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-09 06:22:12 UTC",
    "User": "root"
  },
  "Author": "Magnus Dehli Vigeland [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9134-4962>),\nChristian Carrizosa [aut] (ORCID:\n<https://orcid.org/0000-0002-3919-0011>)",
  "Maintainer": "Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>",
  "MD5sum": "23e4bd86fb0e68a54d0a78bbf09f7ff0",
  "_user": "magnusdv",
  "_type": "src",
  "_file": "segregatr_0.5.0.tar.gz",
  "_fileid": "fa2ff83dae094a9499020c494415a57d828bc749b7b5b832535ceeaceca62659",
  "_filesize": 121226,
  "_sha256": "fa2ff83dae094a9499020c494415a57d828bc749b7b5b832535ceeaceca62659",
  "_created": "2026-06-09T06:22:12.000Z",
  "_published": "2026-06-09T06:43:50.625Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80260978067,
      "time": 124,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7500024435"
    },
    {
      "job": 80260978064,
      "time": 229,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7500051632"
    },
    {
      "job": 80260978047,
      "time": 118,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7500313905"
    },
    {
      "job": 80260978055,
      "time": 109,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7500334272"
    },
    {
      "job": 80260676176,
      "time": 137,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7499991347"
    },
    {
      "job": 80260978051,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7500021350"
    },
    {
      "job": 80260978137,
      "time": 83,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7500013375"
    },
    {
      "job": 80260978078,
      "time": 161,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7500033849"
    },
    {
      "job": 80260978124,
      "time": 82,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7500013206"
    }
  ],
  "_buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/magnusdv/segregatr",
  "_commit": {
    "id": "1674c50a3f646909966044c6647c32da6ac4c9e7",
    "author": "Magnus Dehli Vigeland <magnusdv@medisin.uio.no>",
    "committer": "Magnus Dehli Vigeland <magnusdv@medisin.uio.no>",
    "message": "Increment version to 0.5.0; update NEWS\n",
    "time": 1756141722
  },
  "_maintainer": {
    "name": "Magnus Dehli Vigeland",
    "email": "m.d.vigeland@medisin.uio.no",
    "orcid": "0000-0002-9134-4962"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "pedtools",
      "version": ">= 2.2.0",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "pedprobr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "magnusdv",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-35",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "v0.5.0",
      "date": "2025-08-25"
    }
  ],
  "_topics": [
    "medical-genetics",
    "pedigree-analysis",
    "pedsuite",
    "segregation-analysis",
    "variant-interpretation"
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "magnusdv",
      "count": 73,
      "uuid": 5310284
    },
    {
      "user": "chrcarrizosa",
      "count": 10,
      "uuid": 96529923
    }
  ],
  "_userbio": {
    "uuid": 5310284,
    "type": "user",
    "name": "Magnus Dehli Vigeland",
    "description": "Statistical geneticist"
  },
  "_downloads": {
    "count": 160,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/segregatr"
  },
  "_devurl": "https://github.com/magnusdv/segregatr",
  "_searchresults": 12,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/segregatr.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/magnusdv/segregatr",
  "_realowner": "magnusdv",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2.0",
      "date": "2021-04-15"
    },
    {
      "version": "0.3.0",
      "date": "2023-06-26"
    },
    {
      "version": "0.4.0",
      "date": "2024-06-28"
    },
    {
      "version": "0.5.0",
      "date": "2025-08-26"
    }
  ],
  "_exports": [
    "FLB",
    "plotSegregation",
    "sFLB"
  ],
  "_help": [
    {
      "page": "FLB",
      "title": "Full-likelihood Bayes factor",
      "topics": [
        "FLB"
      ]
    },
    {
      "page": "plotSegregation",
      "title": "Pedigree plot for segregation analysis",
      "topics": [
        "plotSegregation"
      ]
    },
    {
      "page": "sFLB",
      "title": "'Shared' full-likelihood Bayes factor",
      "topics": [
        "sFLB"
      ]
    }
  ],
  "_readme": "https://github.com/magnusdv/segregatr/raw/HEAD/README.md",
  "_rundeps": [
    "evaluate",
    "highr",
    "kinship2",
    "knitr",
    "lattice",
    "lpSolve",
    "Matrix",
    "pedmut",
    "pedprobr",
    "pedtools",
    "quadprog",
    "xfun",
    "yaml"
  ],
  "_score": 3.732393759822968,
  "_indexed": true,
  "_nocasepkg": "segregatr",
  "_universes": [
    "magnusdv"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.5.0",
      "date": "2026-06-09T06:24:05.000Z",
      "distro": "noble",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "1d87a07c908e011c9ff0f9f55bffb05883b2942ea0af836212ee0daf4c314501",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.5.0",
      "date": "2026-06-09T06:25:49.000Z",
      "distro": "noble",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "2923790444d894f16b3aa70d261ea0861853744c94e2ddf8299ad9f58f3dc4b7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.5.0",
      "date": "2026-06-09T06:41:57.000Z",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "b6acad496ff944d9eb1c66f6702a20dbeee9fbf9888ea3e17ed555f2aab4da72",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.5.0",
      "date": "2026-06-09T06:43:15.000Z",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "ce336e496235df3b98f4e122cabeb4b112df76fe52a500d7e086b4ab1da1f103",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.5.0",
      "date": "2026-06-09T06:24:20.000Z",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "9866e9a4b71e131780758b7b31194d4093be44937cbac5a9ad30b5d353a44b89",
      "status": "success",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-09T06:23:20.000Z",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "3c772b8a914f7e520e88921a42d48b2abf9faefeb8b94f91ef91af01b86536b3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-09T06:24:37.000Z",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "57f1af057e6615b28a4902ca06fdad856d1dbced8adc88f9bc2a666aa66d5022",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-09T06:23:18.000Z",
      "commit": "1674c50a3f646909966044c6647c32da6ac4c9e7",
      "fileid": "e3c7ff819b6c4cfec4bae6926d05494fd3bd06e6788e0d709aab510fa43a17bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/magnusdv/actions/runs/27187809256"
    }
  ]
}