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  "Title": "Segregation Analysis for Variant Interpretation",
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  "Description": "An implementation of the full-likelihood Bayes factor\n(FLB) for evaluating segregation evidence in clinical medical\ngenetics. The method was introduced by Thompson et al. (2003)\n<doi:10.1086/378100>. This implementation supports custom\npenetrance values and liability classes, and allows\nvisualisations and robustness analysis as presented in Ratajska\net al. (2023) <doi:10.1002/mgg3.2107>. See also the online app\n'shinyseg', <https://chrcarrizosa.shinyapps.io/shinyseg>, which\noffers interactive segregation analysis with many additional\nfeatures (Carrizosa et al. (2024)\n<doi:10.1093/bioinformatics/btae201>).",
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  "URL": "https://github.com/magnusdv/segregatr",
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  "Repository": "https://magnusdv.r-universe.dev",
  "Date/Publication": "2025-08-25 17:08:42 UTC",
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  "Author": "Magnus Dehli Vigeland [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9134-4962>),\nChristian Carrizosa [aut] (ORCID:\n<https://orcid.org/0000-0002-3919-0011>)",
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