Package: ibdfindr
Title: HMM Toolkit for Inferring IBD Segments from SNP Genotypes
Version: 0.3.1
Authors@R: 
    person("Magnus Dehli", "Vigeland", , "m.d.vigeland@medisin.uio.no", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9134-4962"))
Description: Implements continuous-time hidden Markov models (HMMs) to
        infer identity-by-descent (IBD) segments shared by two
        individuals from their single-nucleotide polymorphism (SNP)
        genotypes. Provides posterior probabilities at each marker
        (forward-backward algorithm), prediction of IBD segments
        (Viterbi algorithm), and functions for visualising results.
        Supports both autosomal data and X-chromosomal data.
License: GPL (>= 3)
URL: https://github.com/magnusdv/ibdfindr
BugReports: https://github.com/magnusdv/ibdfindr/issues
Depends: R (>= 4.2)
Imports: forrel, ggplot2, ibdsim2, pedtools, ribd
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake
Repository: https://magnusdv.r-universe.dev
Date/Publication: 2025-08-18 15:06:38 UTC
RemoteUrl: https://github.com/magnusdv/ibdfindr
RemoteRef: HEAD
RemoteSha: d4d52f8c01aabd4a96f4fe1f9fb5e9144ecd936b
NeedsCompilation: no
Packaged: 2026-06-28 11:20:56 UTC; root
Author: Magnus Dehli Vigeland [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>