Type: Package
Package: ibdsim2
Title: Simulation of Chromosomal Regions Shared by Family Members
Version: 2.3.2.9000
Authors@R: 
    person("Magnus Dehli", "Vigeland", , "m.d.vigeland@medisin.uio.no", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9134-4962"))
Description: Simulation of segments shared identical-by-descent (IBD)
        by pedigree members. Using sex specific recombination rates
        along the human genome (Halldorsson et al. (2019)
        <doi:10.1126/science.aau1043>), phased chromosomes are
        simulated for all pedigree members. Applications include
        calculation of realised relatedness coefficients and IBD
        segment distributions. 'ibdsim2' is part of the 'pedsuite'
        collection of packages for pedigree analysis. A detailed
        presentation of the 'pedsuite', including a separate chapter on
        'ibdsim2', is available in the book 'Pedigree analysis in R'
        (Vigeland, 2021, ISBN:9780128244302). A 'Shiny' app for
        visualising and comparing IBD distributions is available at
        <https://magnusdv.shinyapps.io/ibdsim2-shiny/>.
License: GPL-3
URL: https://github.com/magnusdv/ibdsim2,
        https://magnusdv.github.io/pedsuite/,
        https://magnusdv.shinyapps.io/ibdsim2-shiny/
Depends: pedtools (>= 2.8.0), R (>= 4.2.0)
Imports: ggplot2, glue, Rcpp, ribd (>= 1.7.1)
Suggests: lubridate, MASS, patchwork, shiny, shinyjs, shinyWidgets,
        testthat, zip
LinkingTo: Rcpp
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
LazyData: true
Config/roxygen2/version: 8.0.0
Repository: https://magnusdv.r-universe.dev
Date/Publication: 2026-06-12 08:23:23 UTC
RemoteUrl: https://github.com/magnusdv/ibdsim2
RemoteRef: HEAD
RemoteSha: 86725ea2325dbb19ac195c341d93352a9db86b8b
NeedsCompilation: yes
Packaged: 2026-06-24 02:44:18 UTC; root
Author: Magnus Dehli Vigeland [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>