Package: KLINK 1.0.3.9002

Magnus Dehli Vigeland

KLINK: Kinship Analysis with Linked Markers

A 'shiny' application for forensic kinship testing, based on the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R) software 'Familias' and 'FamLink', but offers several unique features, including visualisations and automated report generation. The calculation of likelihood ratios supports pairs of linked markers, and all common mutation models.

Authors:Magnus Dehli Vigeland [aut, cre]

KLINK_1.0.3.9002.tar.gz
KLINK_1.0.3.9002.zip(r-4.5)KLINK_1.0.3.9002.zip(r-4.4)KLINK_1.0.3.9002.zip(r-4.3)
KLINK_1.0.3.9002.tgz(r-4.5-any)KLINK_1.0.3.9002.tgz(r-4.4-any)KLINK_1.0.3.9002.tgz(r-4.3-any)
KLINK_1.0.3.9002.tar.gz(r-4.5-noble)KLINK_1.0.3.9002.tar.gz(r-4.4-noble)
KLINK_1.0.3.9002.tgz(r-4.4-emscripten)KLINK_1.0.3.9002.tgz(r-4.3-emscripten)
KLINK.pdf |KLINK.html✨
KLINK/json (API)
NEWS

# Install 'KLINK' in R:

install.packages('KLINK', repos = c('https://magnusdv.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/magnusdv/klink/issues

Datasets:

LINKAGEMAP - Built-in linkage map
halfsib - Dataset for a case involving a putative half sibling.
paternity - Dataset for a paternity case
sibship - Dataset for a full vs half sibship case

On CRAN:

forensic-genetics kinship-testing pedsuite shiny

3.81 score 1 stars 5 scripts 236 downloads 10 exports 82 dependencies

Last updated 13 hours agofrom:20380b697f. Checks:8 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 19 2025
R-4.5-win	OK	Feb 19 2025
R-4.5-mac	OK	Feb 19 2025
R-4.5-linux	OK	Feb 19 2025
R-4.4-win	OK	Feb 19 2025
R-4.4-mac	OK	Feb 19 2025
R-4.3-win	OK	Feb 19 2025
R-4.3-mac	OK	Feb 19 2025

Exports:addTotals getLinkedPairs launchApp linkedLR loadFamFile loadMap markerSummary parseXML runKLINK writeResult

Dependencies:base64enc bigD bitops bslib cachem cli colorspace commonmark crayon curl digest dplyr evaluate fansi farver fastmap fontawesome forrel fs generics glue gt highr htmltools htmlwidgets httpuv jquerylib jsonlite juicyjuice kinship2 knitr labeling later lattice lifecycle magrittr markdown Matrix memoise mime munsell openxlsx pbapply pedFamilias pedmut pedprobr pedtools pillar pkgconfig promises quadprog R6 rappdirs RColorBrewer Rcpp reactable reactR ribd rlang rmarkdown sass scales shiny shinydashboard shinyjs slam sourcetools stringi tibble tidyselect tinytex utf8 V8 vctrs verbalisr viridisLite withr xfun xml2 xtable yaml zip

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add totals to a data frame with LR results	addTotals
Identify linked marker pairs	getLinkedPairs
Dataset for a case involving a putative half sibling.	halfsib
Launch KLINK	launchApp runKLINK
Built-in linkage map	LINKAGEMAP
LR with pairwise linked markers	linkedLR
Load '.fam' file	loadFamFile
Load genetic map	loadMap
Generate table of marker data	markerSummary
Parse 'XML' file associated with '.fam' file	parseXML
Dataset for a paternity case	paternity
Dataset for a full vs half sibship case	sibship
Write data and results to Excel	writeResult