Package: KLINK 1.2.0.9000

Magnus Dehli Vigeland

KLINK: Kinship Analysis with Linked Markers

A 'shiny' application for forensic kinship testing, based on the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R) software 'Familias' and 'FamLink', but offers several unique features, including visualisations and automated report generation. The calculation of likelihood ratios supports pairs of linked markers, and all common mutation models.

Authors:Magnus Dehli Vigeland [aut, cre]

KLINK_1.2.0.9000.tar.gz
KLINK_1.2.0.9000.zip(r-4.7)KLINK_1.2.0.9000.zip(r-4.6)KLINK_1.2.0.9000.zip(r-4.5)
KLINK_1.2.0.9000.tgz(r-4.6-any)KLINK_1.2.0.9000.tgz(r-4.5-any)
KLINK_1.2.0.9000.tar.gz(r-4.7-any)KLINK_1.2.0.9000.tar.gz(r-4.6-any)
KLINK_1.2.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
KLINK/json (API)

# Install 'KLINK' in R:

install.packages('KLINK', repos = c('https://magnusdv.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/magnusdv/klink/issues

Datasets:

halfsib - Dataset for a case involving a putative half sibling.
paternity - Dataset for a paternity case
sibship - Dataset for a full vs half sibship case

On CRAN:

forensic-genetics kinship-testing pedsuite shiny

3.18 score 1 stars 5 scripts 543 downloads 12 exports 84 dependencies

Last updated from:f2429b39da. Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	WARNING	166
source / vignettes	OK	198
linux-release-x86_64	WARNING	165
macos-release-arm64	WARNING	109
macos-oldrel-arm64	WARNING	98
windows-devel	WARNING	111
windows-release	WARNING	119
windows-oldrel	WARNING	107
wasm-release	OK	160

Exports:addTotals getLinkedPairs getTotals launchApp linkedLR loadFamFile loadMap map50 markerSummary parseXML runKLINK writeResult

Dependencies:base64enc bigD bitops bslib cachem cli commonmark curl digest dplyr evaluate farver fastmap fontawesome forrel fs generics glue gt highr htmltools htmlwidgets httpuv jquerylib jsonlite juicyjuice kinship2 knitr labeling later lattice lifecycle litedown lpSolve magrittr markdown Matrix memoise mime mirai nanonext norSTR openxlsx otel pedFamilias pedmut pedprobr pedtools pillar pkgconfig promises quadprog R6 rappdirs RColorBrewer Rcpp reactable reactR ribd rlang rmarkdown sass scales shiny shinyBS shinydashboard shinyjs slam sourcetools stringi tibble tidyselect tinytex utf8 V8 vctrs verbalisr viridisLite withr xfun xml2 xtable yaml zip

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Identify linked marker pairs	getLinkedPairs
Get LR totals	addTotals getTotals
Dataset for a case involving a putative half sibling.	halfsib
Launch KLINK	launchApp runKLINK
LR with pairwise linked markers	linkedLR
Load '.fam' file	loadFamFile
Load genetic map	loadMap
Genetic marker map	map50
Generate table of marker data	markerSummary
Parse 'XML' file associated with '.fam' file	parseXML
Dataset for a paternity case	paternity
Dataset for a full vs half sibship case	sibship
Write data and results to Excel	writeResult