Package: KLINK 1.0.3.9000
Magnus Dehli Vigeland
KLINK: Kinship Analysis with Linked Markers
A 'shiny' application for forensic kinship testing, based on the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R) software 'Familias' and 'FamLink', but offers several unique features, including visualisations and automated report generation. The calculation of likelihood ratios supports pairs of linked markers, and all common mutation models.
Authors:
KLINK_1.0.3.9000.tar.gz
KLINK_1.0.3.9000.zip(r-4.5)KLINK_1.0.3.9000.zip(r-4.4)KLINK_1.0.3.9000.zip(r-4.3)
KLINK_1.0.3.9000.tgz(r-4.4-any)KLINK_1.0.3.9000.tgz(r-4.3-any)
KLINK_1.0.3.9000.tar.gz(r-4.5-noble)KLINK_1.0.3.9000.tar.gz(r-4.4-noble)
KLINK_1.0.3.9000.tgz(r-4.4-emscripten)KLINK_1.0.3.9000.tgz(r-4.3-emscripten)
KLINK.pdf |KLINK.html✨
KLINK/json (API)
NEWS
| # Install 'KLINK' in R: |
| install.packages('KLINK', repos = c('https://magnusdv.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/magnusdv/klink/issues
- LINKAGEMAP - Built-in linkage map
- halfsib - Dataset for a case involving a putative half sibling.
- paternity - Dataset for a paternity case
- sibship - Dataset for a full vs half sibship case
forensic-geneticskinship-testingpedsuiteshiny
Last updated 8 days agofrom:65a786ce2a. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 15 2024 |
| R-4.5-win | OK | Nov 15 2024 |
| R-4.5-linux | OK | Nov 15 2024 |
| R-4.4-win | OK | Nov 15 2024 |
| R-4.4-mac | OK | Nov 15 2024 |
| R-4.3-win | OK | Nov 15 2024 |
| R-4.3-mac | OK | Nov 15 2024 |
Exports:getLinkedPairslaunchApplinkedLRloadFamFilemarkerSummaryparseXMLrunKLINKwriteResult
Dependencies:base64encbigDbitopsbslibcachemclicolorspacecommonmarkcrayoncurldigestdplyrevaluatefansifarverfastmapfontawesomeforrelfsgenericsgluegthighrhtmltoolshtmlwidgetshttpuvjquerylibjsonlitejuicyjuicekinship2knitrlabelinglaterlatticelifecyclemagrittrmarkdownMatrixmemoisemimemunsellopenxlsxpbapplypedFamiliaspedmutpedprobrpedtoolspillarpkgconfigpromisesquadprogR6rappdirsRColorBrewerRcppreactablereactRribdrlangrmarkdownsassscalesshinyshinydashboardshinyjsslamsourcetoolsstringitibbletidyselecttinytexutf8V8vctrsverbalisrviridisLitewithrxfunxml2xtableyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Identify linked marker pairs | getLinkedPairs |
| Dataset for a case involving a putative half sibling. | halfsib |
| Launch KLINK | launchApp runKLINK |
| Built-in linkage map | LINKAGEMAP |
| LR with pairwise linked markers | linkedLR |
| Load '.fam' file | loadFamFile |
| Generate table of marker data | markerSummary |
| Parse 'XML' file associated with '.fam' file | parseXML |
| Dataset for a paternity case | paternity |
| Dataset for a full vs half sibship case | sibship |
| Write data and results to Excel | writeResult |