Package: KLINK 1.0.3.9004
Magnus Dehli Vigeland
KLINK: Kinship Analysis with Linked Markers
A 'shiny' application for forensic kinship testing, based on the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R) software 'Familias' and 'FamLink', but offers several unique features, including visualisations and automated report generation. The calculation of likelihood ratios supports pairs of linked markers, and all common mutation models.
Authors:
KLINK_1.0.3.9004.tar.gz
KLINK_1.0.3.9004.zip(r-4.5)KLINK_1.0.3.9004.zip(r-4.4)KLINK_1.0.3.9004.zip(r-4.3)
KLINK_1.0.3.9004.tgz(r-4.5-any)KLINK_1.0.3.9004.tgz(r-4.4-any)KLINK_1.0.3.9004.tgz(r-4.3-any)
KLINK_1.0.3.9004.tar.gz(r-4.5-noble)KLINK_1.0.3.9004.tar.gz(r-4.4-noble)
KLINK_1.0.3.9004.tgz(r-4.4-emscripten)KLINK_1.0.3.9004.tgz(r-4.3-emscripten)
KLINK.pdf |KLINK.html✨
KLINK/json (API)
NEWS
| # Install 'KLINK' in R: |
| install.packages('KLINK', repos = c('https://magnusdv.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/magnusdv/klink/issues
- LINKAGEMAP - Built-in linkage map
- halfsib - Dataset for a case involving a putative half sibling.
- paternity - Dataset for a paternity case
- sibship - Dataset for a full vs half sibship case
forensic-geneticskinship-testingpedsuiteshiny
Last updated 21 days agofrom:bfbcee1798. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 11 2025 |
| R-4.5-win | OK | Mar 11 2025 |
| R-4.5-mac | OK | Mar 11 2025 |
| R-4.5-linux | OK | Mar 11 2025 |
| R-4.4-win | OK | Mar 11 2025 |
| R-4.4-mac | OK | Mar 11 2025 |
| R-4.4-linux | OK | Mar 11 2025 |
| R-4.3-win | OK | Mar 11 2025 |
| R-4.3-mac | OK | Mar 11 2025 |
Exports:addTotalsgetLinkedPairslaunchApplinkedLRloadFamFileloadMapmarkerSummaryparseXMLrunKLINKwriteResult
Dependencies:base64encbigDbitopsbslibcachemclicolorspacecommonmarkcrayoncurldigestdplyrevaluatefansifarverfastmapfontawesomeforrelfsgenericsgluegthighrhtmltoolshtmlwidgetshttpuvjquerylibjsonlitejuicyjuicekinship2knitrlabelinglaterlatticelifecyclemagrittrmarkdownMatrixmemoisemimemunsellopenxlsxpbapplypedFamiliaspedmutpedprobrpedtoolspillarpkgconfigpromisesquadprogR6rappdirsRColorBrewerRcppreactablereactRribdrlangrmarkdownsassscalesshinyshinydashboardshinyjsslamsourcetoolsstringitibbletidyselecttinytexutf8V8vctrsverbalisrviridisLitewithrxfunxml2xtableyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add totals to a data frame with LR results | addTotals |
| Identify linked marker pairs | getLinkedPairs |
| Dataset for a case involving a putative half sibling. | halfsib |
| Launch KLINK | launchApp runKLINK |
| Built-in linkage map | LINKAGEMAP |
| LR with pairwise linked markers | linkedLR |
| Load '.fam' file | loadFamFile |
| Load genetic map | loadMap |
| Generate table of marker data | markerSummary |
| Parse 'XML' file associated with '.fam' file | parseXML |
| Dataset for a paternity case | paternity |
| Dataset for a full vs half sibship case | sibship |
| Write data and results to Excel | writeResult |