Pedigrees | The ped class | Basic pedigree plots | Built-in pedigree structures | Examples of pedigree construction | Example 1: Trio | Example 2: An inbred child | Example 3: A complex family tree | Pedigree subsets | Markers | Creating marker objects | Plotting pedigrees with marker data | Markers attached to pedigrees | Accessing and modifying individual markers | Getting/setting/modifying many markers simultaneously

Installation | A quick tour | 1. Create a pedigree (pedtools) | 2. Calculate the inbreeding coefficient (ribd) | 3. Realised inbreeding (ibdsim2) | 4. Marker simulation (forrel) | 5. Inference of pairwise relationships (forrel) | Where to go from here