Package: pedmut 0.7.1

Magnus Dehli Vigeland

pedmut: Mutation Models for Pedigree Likelihood Computations

A collection of functions for modelling mutations in pedigrees with marker data, as used e.g. in likelihood computations with microsatellite data. Implemented models include equal, proportional and stepwise models, as well as random models for experimental work, and custom models allowing the user to apply any valid mutation matrix. Allele lumping is done following the lumpability criteria of Kemeny and Snell (1976), ISBN:0387901922.

Authors:Magnus Dehli Vigeland [aut, cre], Thore Egeland [ctb]

pedmut_0.7.1.tar.gz
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pedmut.pdf |pedmut.html✨
pedmut/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/magnusdv/pedmut/issues

On CRAN:

19 exports 2 stars 3.37 score 0 dependencies 19 dependents 3 scripts 601 downloads

Last updated 8 months agofrom:450f2bdf76. Checks:OK: 7. Indexed: yes.

Exports:alwaysLumpablefindStationarygetParamsisBoundedisLumpableisMutationMatrixisMutationModelisReversibleisStationarylumpedMatrixlumpedModelmutationMatrixmutationModelmutRatesexEqualstabilizestepwiseReversiblevalidateMutationMatrixvalidateMutationModel

Dependencies: