Package: ribd 1.7.1.9000

Magnus Dehli Vigeland

ribd: Pedigree-based Relatedness Coefficients

Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, which enables construction of any given kappa coefficients, as described in Vigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition to the standard coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients, multi-person coefficients and two-locus coefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are available through the online app 'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022) <doi:10.1186/s12859-022-04759-y>.

Authors:Magnus Dehli Vigeland [aut, cre]

ribd_1.7.1.9000.tar.gz
ribd_1.7.1.9000.zip(r-4.7)ribd_1.7.1.9000.zip(r-4.6)ribd_1.7.1.9000.zip(r-4.5)
ribd_1.7.1.9000.tgz(r-4.6-any)ribd_1.7.1.9000.tgz(r-4.5-any)
ribd_1.7.1.9000.tar.gz(r-4.7-any)ribd_1.7.1.9000.tar.gz(r-4.6-any)
ribd_1.7.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
ribd/json (API)
NEWS

# Install 'ribd' in R:
install.packages('ribd', repos = c('https://magnusdv.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/magnusdv/ribd/issues

Pkgdown/docs site:https://magnusdv.github.io

Datasets:

On CRAN:

Conda:

inbreeding-coefficientkinshippedigree-analysispedsuiterelatedness

5.10 score 7 stars 11 packages 11 scripts 712 downloads 1 mentions 26 exports 14 dependencies

Last updated from:137df46a00. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK161
source / vignettesOK200
linux-release-x86_64OK152
macos-release-arm64OK95
macos-oldrel-arm64OK106
windows-develOK130
windows-releaseOK143
windows-oldrelOK114
wasm-releaseOK131

Exports:coeffTablecondensedIdentitycondensedIdentityXconstructPedigreedetailed2condensedELRgipgKinshipibdDrawibdTriangleidentityCoefsinbreedingkappaIBDkin2degkinshipkinship2_inbreedingkinship2_kinshipminimalPatternmultiPersonIBDrealisedIbdVarianceshowInTriangletwoLocusIBDtwoLocusIdentitytwoLocusInbreedingtwoLocusKinshiptwoLocusPlot

Dependencies:evaluategluehighrkinship2knitrlatticelpSolveMatrixpedmutpedtoolsquadprogslamxfunyaml