Package: ribd 1.7.1
Magnus Dehli Vigeland
ribd: Pedigree-based Relatedness Coefficients
Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, which enables construction of any given kappa coefficients, as described in Vigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition to the standard coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients, multi-person coefficients and two-locus coefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are available through the online app 'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022) <doi:10.1186/s12859-022-04759-y>.
Authors:
ribd_1.7.1.tar.gz
ribd_1.7.1.zip(r-4.5)ribd_1.7.1.zip(r-4.4)ribd_1.7.1.zip(r-4.3)
ribd_1.7.1.tgz(r-4.4-any)ribd_1.7.1.tgz(r-4.3-any)
ribd_1.7.1.tar.gz(r-4.5-noble)ribd_1.7.1.tar.gz(r-4.4-noble)
ribd_1.7.1.tgz(r-4.4-emscripten)ribd_1.7.1.tgz(r-4.3-emscripten)
ribd.pdf |ribd.html✨
ribd/json (API)
NEWS
# Install 'ribd' in R: |
install.packages('ribd', repos = c('https://magnusdv.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/magnusdv/ribd/issues
- basicRelationships - Basic relationships
- jicaque - Jicaque pedigree
inbreeding-coefficientkinshippedigree-analysisrelatedness
Last updated 1 months agofrom:a2cdf63d91. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 09 2024 |
R-4.5-win | OK | Nov 09 2024 |
R-4.5-linux | OK | Nov 09 2024 |
R-4.4-win | OK | Nov 09 2024 |
R-4.4-mac | OK | Nov 09 2024 |
R-4.3-win | OK | Nov 09 2024 |
R-4.3-mac | OK | Nov 09 2024 |
Exports:coeffTablecondensedIdentitycondensedIdentityXconstructPedigreedetailed2condensedELRgipgKinshipibdDrawibdTriangleidentityCoefsinbreedingkappaIBDkin2degkinshipkinship2_inbreedingkinship2_kinshipminimalPatternmultiPersonIBDrealisedIbdVarianceshowInTriangletwoLocusIBDtwoLocusIdentitytwoLocusInbreedingtwoLocusKinshiptwoLocusPlot
Dependencies:evaluategluehighrkinship2knitrlatticeMatrixpedmutpedtoolsquadprogslamxfunyaml