Package: ribd 1.7.2


Magnus Dehli Vigeland
ribd: Pedigree-based Relatedness Coefficients
Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, which enables construction of any given kappa coefficients, as described in Vigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition to the standard coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients, multi-person coefficients and two-locus coefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are available through the online app 'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022) <doi:10.1186/s12859-022-04759-y>.
Authors:
ribd_1.7.2.tar.gz
ribd_1.7.2.zip(r-4.7-any)ribd_1.7.2.zip(r-4.6-any)ribd_1.7.2.zip(r-4.5-any)
ribd_1.7.2.tgz(r-4.6-any)ribd_1.7.2.tgz(r-4.5-any)
ribd_1.7.2.tar.gz(r-4.7-any)ribd_1.7.2.tar.gz(r-4.6-any)
ribd_1.7.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ribd/json (API)
| # Install 'ribd' in R: |
| install.packages('ribd', repos = c('https://magnusdv.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/magnusdv/ribd/issues
Pkgdown/docs site:https://magnusdv.github.io
- basicRelationships - Basic relationships
- jicaque - Jicaque pedigree
inbreeding-coefficientkinshippedigree-analysispedsuiterelatedness
Last updated from:0e833f3862. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 193 | ||
| source / vignettes | OK | 214 | ||
| linux-release | OK | 147 | ||
| macos-release | OK | 143 | ||
| macos-oldrel | OK | 167 | ||
| windows-devel | OK | 166 | ||
| windows-release | OK | 85 | ||
| windows-oldrel | OK | 106 | ||
| wasm-release | OK | 103 |
Exports:coeffTablecondensedIdentitycondensedIdentityXconstructPedigreedetailed2condensedELRgipgKinshipibdDrawibdTriangleidentityCoefsinbreedingkappaIBDkin2degkinshipkinship2_inbreedingkinship2_kinshipminimalPatternmultiPersonIBDrealisedIbdVarianceshowInTriangletwoLocusIBDtwoLocusIdentitytwoLocusInbreedingtwoLocusKinshiptwoLocusPlot
Dependencies:evaluategluehighrkinship2knitrlatticelpSolveMatrixpedmutpedtoolsquadprogslamxfunyaml